Basic Information
Locus ID:
Sp1g20180.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Receptor homology region, transmembrane domain- and RING domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 7418832 | 7420602 | - | Sp1g20180.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 46,520.54 Da | 59.41 | 86.00 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 229 | 272 | 1.18731E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 12 | 161 | 2.0273E-51 | IPR044744 |
| Pfam | PF02225 | PA domain | 57 | 141 | 7.0E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 229 | 272 | 1.1E-11 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 75 | 144 | 4.19E-7 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 208 | 277 | 1.77E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 191 | 277 | 1.9E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 23 | 159 | 5.0E-25 | - |
| SMART | SM00184 | ring_2 | 230 | 271 | 3.7E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 230 | 272 | 12.54829 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G22670.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_002893243.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 3 [Arabidopsis lyrata subsp. lyrata] | 0 |
| F4I2Y3 | Receptor homology region, transmembrane domain- and RING domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=RMR3 PE=3 SV=1 | 0 | |
| TrEMBL | A0A397XZ50 | RING-type domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_I03298 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology