Basic Information
Locus ID:
Sp1g17550.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Jacalin-like lectin domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 6309324 | 6312222 | - | Sp1g17550.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.80 | 64,753.89 Da | 27.30 | 68.00 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 248 | 374 | 4.52707E-38 | IPR033734 |
| CDD | cd09612 | Jacalin | 445 | 575 | 5.68436E-36 | IPR033734 |
| CDD | cd09612 | Jacalin | 18 | 148 | 1.50456E-50 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 18 | 147 | 1.4E-36 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 247 | 375 | 5.1E-28 | IPR001229 |
| Pfam | PF01419 | Jacalin-like lectin domain | 442 | 575 | 4.3E-31 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 235 | 374 | 2.62E-40 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 430 | 574 | 8.11E-43 | IPR036404 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 8 | 147 | 2.62E-44 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 220 | 375 | 5.9E-48 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 1 | 147 | 3.7E-56 | IPR036404 |
| Gene3D | G3DSA:2.100.10.30 | - | 426 | 575 | 1.2E-51 | IPR036404 |
| SMART | SM00915 | Jacalin_2 | 245 | 376 | 1.0E-41 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 442 | 576 | 4.1E-40 | IPR001229 |
| SMART | SM00915 | Jacalin_2 | 18 | 149 | 1.0E-48 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 7 | 149 | 55.888592 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 431 | 576 | 51.705471 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 234 | 376 | 49.885906 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19715.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_006416472.1 | jacalin-related lectin 3 [Eutrema salsugineum] | 0 |
| F4HQX1 | Jacalin-related lectin 3 OS=Arabidopsis thaliana OX=3702 GN=JAL3 PE=2 SV=1 | 0 | |
| TrEMBL | V4KAV3 | Jacalin-related lectin 3 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007145mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology