Basic Information
Locus ID:
Sp1g17210.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 6191661 | 6193179 | - | Sp1g17210.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 24,322.25 Da | 46.43 | 67.69 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 21 | 65 | 4.13299E-30 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 21 | 68 | 1.3E-9 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 19 | 76 | 7.25E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 5 | 77 | 2.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 23 | 63 | 7.8E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 23 | 64 | 13.625259 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 38 | 47 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 107 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006416519.1 | RING finger protein 5 [Eutrema salsugineum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | V4KXV3 | RING-type E3 ubiquitin transferase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008430mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology