Basic Information
Locus ID:
Sp1g17180.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 6179136 | 6181502 | + | Sp1g17180.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.01 | 59,862.30 Da | 41.78 | 62.24 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 168 | 220 | 1.01409E-27 | - |
| Pfam | PF12315 | Protein DA1 | 317 | 525 | 5.4E-97 | IPR022087 |
| Pfam | PF00412 | LIM domain | 168 | 221 | 5.0E-8 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 161 | 193 | 2.24E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 164 | 237 | 1.2E-12 | - |
| SMART | SM00132 | lim_4 | 167 | 219 | 4.7E-9 | IPR001781 |
| SMART | SM00726 | uim | 97 | 116 | 0.13 | IPR003903 |
| SMART | SM00726 | uim | 66 | 85 | 0.018 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 66 | 85 | 9.785403 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 97 | 116 | 10.058182 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 166 | 226 | 11.7019 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 168 | 202 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 473 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 476 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 0 |
| RefSeq | XP_013637743.1 | PREDICTED: protein DA1 isoform X1 [Brassica oleracea var. oleracea] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8S9SAU3 | LIM zinc-binding domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q69_00027104 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology