Basic Information
Locus ID:
Sp1g17010.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 6104782 | 6106930 | + | Sp1g17010.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 55,086.18 Da | 38.82 | 84.49 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01657 | Salt stress response/antifungal | 24 | 79 | 6.5E-8 | IPR002902 |
| Pfam | PF01657 | Salt stress response/antifungal | 125 | 187 | 1.2E-10 | IPR002902 |
| Pfam | PF00069 | Protein kinase domain | 290 | 461 | 2.4E-27 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 287 | 483 | 2.19E-45 | IPR011009 |
| Gene3D | G3DSA:3.30.430.20 | - | 94 | 191 | 1.6E-12 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 5 | 82 | 3.6E-11 | IPR038408 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 280 | 475 | 1.8E-54 | - |
| SMART | SM00220 | serkin_6 | 116 | 464 | 2.3E-7 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 88 | 191 | 13.583126 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 1 | 82 | 12.288676 | IPR002902 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 116 | 481 | 23.071648 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 318 | 330 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19090.1 | receptor-like serine/threonine kinase 2. receptor-like serine/threonine kinase (RKF2) | 0 |
| RefSeq | XP_024008813.1 | cysteine-rich receptor-like protein kinase 1 [Eutrema salsugineum] | 0 |
| Q9LMB9 | Cysteine-rich receptor-like protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRK1 PE=2 SV=2 | 0 | |
| TrEMBL | V4KXX6 | Cysteine-rich receptor-like protein kinase 1 OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007076mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G19090.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10007076m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g17010.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g033650.2N |