Basic Information
Locus ID:
Sp1g16890.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 6063749 | 6069724 | - | Sp1g16890.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.61 | 146,864.67 Da | 51.63 | 82.49 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1175 | 1218 | 2.34516E-22 | - |
| CDD | cd12108 | Hr-like | 49 | 178 | 2.65955E-27 | - |
| CDD | cd12108 | Hr-like | 624 | 770 | 2.11143E-23 | - |
| Pfam | PF05495 | CHY zinc finger | 1048 | 1122 | 8.0E-18 | IPR008913 |
| Pfam | PF14599 | Zinc-ribbon | 1223 | 1280 | 1.4E-25 | IPR039512 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 53 | 180 | 4.2E-8 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 622 | 769 | 1.5E-5 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1174 | 1217 | 1.0E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1174 | 1222 | 7.39E-9 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1039 | 1105 | 3.92E-17 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1113 | 1168 | 2.48E-15 | IPR037275 |
| Gene3D | G3DSA:2.20.28.10 | - | 1246 | 1282 | 1.4E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 45 | 198 | 1.0E-24 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 618 | 798 | 2.3E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1169 | 1220 | 3.2E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 1176 | 1217 | 1.1E-5 | IPR001841 |
| SMART | SM00184 | ring_2 | 1090 | 1120 | 13.0 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1041 | 1110 | 23.644884 | IPR008913 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1112 | 1175 | 28.81686 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1176 | 1218 | 11.840146 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 909 | 941 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 901 | 947 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_024008808.1 | LOW QUALITY PROTEIN: zinc finger protein BRUTUS-like At1g18910 [Eutrema salsugineum] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2CH62 | Zinc finger RING-type OS=Arabidopsis suecica OX=45249 GN=ISN44_As06g018900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology