Basic Information
Locus ID:
Sp1g15520.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Oligouridylate-binding protein 1B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 5534063 | 5537291 | - | Sp1g15520.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.23 | 45,651.86 Da | 48.81 | 70.02 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 55 | 125 | 5.49174E-36 | - |
| CDD | cd12354 | RRM3_TIA1_like | 259 | 334 | 1.21275E-33 | - |
| CDD | cd12619 | RRM2_PUB1 | 139 | 213 | 1.77258E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 55 | 121 | 5.1E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 140 | 210 | 2.1E-16 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 261 | 327 | 4.8E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 251 | 349 | 1.63E-19 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 51 | 216 | 2.12E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 137 | 220 | 1.6E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 338 | 2.1E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 136 | 1.9E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 260 | 330 | 2.4E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 139 | 212 | 1.6E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 54 | 123 | 4.2E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 259 | 334 | 14.368207 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 53 | 127 | 15.186867 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 138 | 216 | 16.755964 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_013599485.1 | PREDICTED: oligouridylate-binding protein 1B [Brassica oleracea var. oleracea] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A078J8R6 | BnaAnng18890D protein OS=Brassica napus OX=3708 GN=BnaAnng18890D PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology