Basic Information
Locus ID:
Sp1g14430.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 5168311 | 5171122 | + | Sp1g14430.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.28 | 39,766.92 Da | 54.66 | 79.84 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 9.3348E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 324 | 359 | 6.4E-12 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 146 | 184 | 1.3E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 241 | 296 | 1.3E-23 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 9.1E-15 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 303 | 365 | 2.86E-15 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 142 | 191 | 4.5E-13 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 87 | 2.76E-20 | IPR029071 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 237 | 305 | 5.76E-24 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.6E-25 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 231 | 296 | 4.7E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 139 | 189 | 1.5E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 316 | 365 | 3.5E-23 | - |
| SMART | SM00165 | uba_6 | 146 | 186 | 1.7E-4 | IPR015940 |
| SMART | SM00727 | CBM | 239 | 282 | 9.6E-7 | IPR006636 |
| SMART | SM00165 | uba_6 | 324 | 361 | 2.2E-8 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.9E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 367 | 4.2E-121 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 187 | 12.522797 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.366758 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 322 | 362 | 15.390351 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 350 | 365 | 1.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 267 | 289 | 1.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 335 | 349 | 1.6E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 318 | 334 | 1.6E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 133 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G16190.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_006306209.1 | probable ubiquitin receptor RAD23a [Capsella rubella] | 0 |
| Q84L32 | Probable ubiquitin receptor RAD23a OS=Arabidopsis thaliana OX=3702 GN=RAD23A PE=2 SV=2 | 0 | |
| TrEMBL | A0A565AR56 | Ubiquitin receptor RAD23 OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS1957 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology