Basic Information
Locus ID:
Sp1g13960.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 5018904 | 5020142 | + | Sp1g13960.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.46 | 33,012.77 Da | 45.44 | 90.97 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 251 | 294 | 4.2E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 248 | 297 | 1.0E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 247 | 295 | 2.9E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 252 | 293 | 2.0E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 252 | 294 | 12.135206 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 54 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 42 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15590.1 | 0 | |
| RefSeq | XP_018433437.1 | PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X2 [Raphanus sativus] | 0 |
| Q8RX29 | RING-H2 finger protein ATL70 OS=Arabidopsis thaliana OX=3702 GN=ATL70 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T2CAA7 | Zinc finger RING-CH-type OS=Arabidopsis suecica OX=45249 GN=ISN44_As06g015540 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G15590.1 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g13960.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB03g026370.2N |