Basic Information
Locus ID:
Sp1g13800.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 4953074 | 4955068 | + | Sp1g13800.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 29,652.64 Da | 59.29 | 52.43 | -0.77 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 46 | 100 | 1.1E-23 | IPR012866 |
| Pfam | PF07800 | Protein of unknown function (DUF1644) | 102 | 180 | 5.3E-21 | IPR012866 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 160 | 8.1E-6 | IPR013083 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15430.1 | Protein of unknown function (DUF1644). | 0 |
| RefSeq | XP_006416905.1 | uncharacterized protein LOC18993326 [Eutrema salsugineum] | 0 |
| TrEMBL | V4L676 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10008539mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 4 | AT1G15430.1, AT1G80220.1, AT2G26050.1, AT5G38370.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008539m.g.v1.0, Thhalv10019622m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13800.v2.2, Sp5g35590.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g006440.2N, BniB03g026300.2N, BniB06g040840.2N ... |