Basic Information
Locus ID:
Sp1g13230.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 4769000 | 4772410 | - | Sp1g13230.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 109,975.30 Da | 42.23 | 86.34 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 5 | 74 | 5.07329E-8 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 308 | 823 | 7.7E-162 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 2 | 68 | 3.47E-6 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 87 | 1.2E-5 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 3 | 74 | 9.046923 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14790.1 | RNA-dependent RNA polymerase 1. Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). Involved in the production of Cucumber Mosaic Virus siRNAs. | 0 |
| RefSeq | XP_009148868.1 | RNA-dependent RNA polymerase 1 [Brassica rapa] | 0 |
| Q9LQV2 | RNA-dependent RNA polymerase 1 OS=Arabidopsis thaliana OX=3702 GN=RDR1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7W5M3 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_006549 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology