Basic Information
Locus ID:
Sp1g12770.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 4582449 | 4584157 | - | Sp1g12770.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 17,281.23 Da | 73.60 | 69.34 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 7 | 145 | 4.63706E-74 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 8 | 144 | 2.0E-52 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 1 | 150 | 1.21E-62 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 1 | 148 | 2.6E-67 | IPR016135 |
| SMART | SM00212 | ubc_7 | 7 | 150 | 7.7E-67 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 4 | 150 | 59.658169 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 77 | 92 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 129 | 146 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 152 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14400.1 | ubiquitin carrier protein 1. ubiquitin carrier protein | 0 |
| RefSeq | XP_020868927.1 | ubiquitin-conjugating enzyme E2 1 [Arabidopsis lyrata subsp. lyrata] | 0 |
| P25865 | Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana OX=3702 GN=UBC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A397YF06 | UBC core domain-containing protein OS=Brassica campestris OX=3711 GN=BRAA09T41586Z PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology