Basic Information
Locus ID:
Sp1g11070.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Vacuolar protein sorting-associated protein 18 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3945959 | 3952813 | + | Sp1g11070.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 112,305.83 Da | 44.56 | 88.89 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16462 | RING-H2_Pep3p_like | 834 | 951 | 1.46023E-14 | - |
| Pfam | PF00637 | Region in Clathrin and VPS | 593 | 745 | 5.2E-12 | IPR000547 |
| Pfam | PF05131 | Pep3/Vps18/deep orange family | 248 | 402 | 1.1E-36 | IPR007810 |
| SUPERFAMILY | SSF57850 | RING/U-box | 824 | 885 | 3.65E-6 | - |
| SMART | SM00184 | ring_2 | 836 | 946 | 0.008 | IPR001841 |
| ProSiteProfiles | PS50236 | Clathrin heavy-chain (CHCR) repeat profile. | 589 | 749 | 24.463608 | IPR000547 |
| Coils | Coil | Coil | 785 | 819 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12470.1 | zinc ion binding. | 0 |
| RefSeq | XP_006417228.1 | vacuolar protein sorting-associated protein 18 homolog [Eutrema salsugineum] | 0 |
| F4IDS7 | Vacuolar sorting protein 18 OS=Arabidopsis thaliana OX=3702 GN=VPS18 PE=1 SV=1 | 0 | |
| TrEMBL | V4KZX4 | RING-type domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006686mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg25893 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21006 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah037734 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g111440 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12767, Sbi_jg53130 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg8751 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00013710 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl12875, Sgl18117 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000005811, gene:ENSEOMG00000022331 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2BG0007090, CQ.Regalona.r1.5AG0013740 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30019280 |
| Apiaceae | Apium graveolens | 1 | Ag4G02032 |
| Arecaceae | Cocos nucifera | 1 | COCNU_12G004080 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709893 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.2762.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G01558 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G12470.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10006686m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g11070.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g005160.2N, BniB04g027270.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2540 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2627 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00240 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0311s00013.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g29050 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.1944 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00022146, Pov_00025622 |
| Plumbaginaceae | Limonium bicolor | 3 | Lb2G09129, Lb5G28516, Lb5G28571 |
| Poaceae | Echinochloa crus-galli | 2 | BH08.496, CH08.554 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0619260, gene-QOZ80_8BG0646820 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0509400.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_032882 |
| Poaceae | Oryza coarctata | 1 | Oco15G003290 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g08060.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G063500 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0402421 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr16G002090, Chr17G001920, Chr20G011970, Chr29G010690 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G604700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG055640, gene_TRIDC5BG059620 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G380600.2, TraesCS5B02G384200.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb412950_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38972 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22559 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG03.87 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc10g00690, gene.Posoc10g00880 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.1294 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-20875 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-8730 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21278 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.797 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00009368 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1255 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-4783 |
| Salicaceae | Populus euphratica | 1 | populus_peu16923 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132605934 |
| Solanaceae | Solanum chilense | 1 | SOLCI001389400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107023179 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13790 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G2374 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29320.v3.1 |