Basic Information
Locus ID:
Sp1g10040.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
CMT1
Description:
C-5 cytosine-specific DNA methylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3565489 | 3570056 | - | Sp1g10040.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 88,405.28 Da | 41.22 | 82.22 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18635 | CD_CMT3_like | 325 | 382 | 3.83313E-24 | - |
| CDD | cd04716 | BAH_plantDCM_I | 64 | 180 | 1.57944E-54 | - |
| Pfam | PF00385 | Chromo (CHRromatin Organisation MOdifier) domain | 348 | 381 | 1.0E-7 | IPR023780 |
| Pfam | PF00145 | C-5 cytosine-specific DNA methylase | 391 | 748 | 2.5E-34 | IPR001525 |
| Pfam | PF01426 | BAH domain | 68 | 180 | 2.1E-13 | IPR001025 |
| SUPERFAMILY | SSF53335 | S-adenosyl-L-methionine-dependent methyltransferases | 212 | 750 | 3.84E-73 | IPR029063 |
| SUPERFAMILY | SSF54160 | Chromo domain-like | 313 | 381 | 2.75E-11 | IPR016197 |
| Gene3D | G3DSA:3.90.120.10 | DNA Methylase, subunit A, domain 2 | 549 | 717 | 3.9E-57 | - |
| Gene3D | G3DSA:2.30.30.490 | - | 4 | 169 | 1.4E-49 | IPR043151 |
| Gene3D | G3DSA:3.40.50.150 | Vaccinia Virus protein VP39 | 170 | 548 | 7.3E-150 | - |
| SMART | SM00439 | BAH_4 | 65 | 184 | 4.0E-25 | IPR001025 |
| SMART | SM00298 | chromo_7 | 325 | 385 | 7.7E-9 | IPR000953 |
| TIGRFAM | TIGR00675 | dcm: DNA (cytosine-5-)-methyltransferase | 395 | 744 | 2.2E-30 | IPR001525 |
| ProSiteProfiles | PS51679 | C-5 cytosine-specific DNA methylase (Dnmt) domain profile. | 210 | 758 | 42.627884 | IPR001525 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 65 | 184 | 20.518682 | IPR001025 |
| ProSiteProfiles | PS50013 | Chromo and chromo shadow domain profile. | 326 | 380 | 11.272401 | IPR000953 |
| ProSitePatterns | PS00598 | Chromo domain signature. | 350 | 370 | - | IPR023779 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 440 | 454 | 1.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 486 | 499 | 1.4E-11 | IPR001525 |
| PRINTS | PR00105 | Cytosine-specific DNA methyltransferase signature | 211 | 227 | 1.4E-11 | IPR001525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 295 | 317 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80740.1 | chromomethylase 1. ecotype Kl-0 chromomethylase (CMT1). A plant line expressing an RNAi construct directed against DMT4 has reduced agrobacterium-mediated tumor formation. | 0 |
| RefSeq | XP_018435124.1 | PREDICTED: putative DNA (cytosine-5)-methyltransferase CMT1 [Raphanus sativus] | 0 |
| O49139 | Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis thaliana OX=3702 GN=CMT1 PE=5 SV=2 | 0 | |
| TrEMBL | A0A6J0JJV5 | putative DNA (Cytosine-5)-methyltransferase CMT1 OS=Raphanus sativus OX=3726 GN=LOC108807343 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology