Basic Information
Locus ID:
Sp1g09830.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3481317 | 3488064 | + | Sp1g09830.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.86 | 110,924.72 Da | 48.92 | 77.96 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 2 | 253 | 3.35284E-65 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 92 | 128 | 4.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 134 | 170 | 2.5E-10 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 174 | 212 | 9.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 7 | 44 | 0.029 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 849 | 1007 | 1.0E-45 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 51 | 86 | 0.071 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 270 | 7.94E-70 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 132 | 1.3E-33 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 133 | 299 | 2.8E-38 | IPR015943 |
| SMART | SM00320 | WD40_4 | 4 | 44 | 5.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 173 | 212 | 5.1E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 47 | 86 | 0.0011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 128 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 170 | 2.2E-12 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 253 | 0.73 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 54 | 88 | 10.126507 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 180 | 221 | 15.086744 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 96 | 130 | 12.130133 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 175 | 13.817396 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 11 | 53 | 10.508451 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 96 | 137 | 15.454345 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 179 | 17.994127 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 54 | 95 | 13.382416 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 180 | 215 | 11.998316 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 157 | 171 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 199 | 213 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 115 | 129 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 157 | 171 | 6.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 199 | 213 | 6.9E-8 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 115 | 129 | 6.9E-8 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 1 | 1010 | 18.851585 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 506 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 401 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 455 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 526 | 550 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 505 | 574 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 421 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11160.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_024008334.1 | katanin p80 WD40 repeat-containing subunit B1 homolog [Eutrema salsugineum] | 0 |
| A0A1P8AW69 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.1 OS=Arabidopsis thaliana OX=3702 GN=KTN80.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A565AQM3 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS1373 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology