Basic Information
Locus ID:
Sp1g09710.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3434915 | 3436934 | + | Sp1g09710.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 35,936.08 Da | 48.14 | 84.81 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 64 | 116 | 2.49966E-19 | - |
| Pfam | PF12906 | RING-variant domain | 64 | 115 | 2.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 60 | 120 | 5.18E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 49 | 128 | 5.1E-18 | IPR013083 |
| SMART | SM00744 | ringv_2 | 63 | 116 | 1.4E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 56 | 122 | 22.120481 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11020.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_006417397.1 | uncharacterized protein LOC18993775 [Eutrema salsugineum] | 0 |
| TrEMBL | A0A1J3F6Q7 | E3 ubiquitin-protein ligase MARCH3 OS=Noccaea caerulescens OX=107243 GN=LC_TR7299_c0_g1_i1_g.24386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology