Basic Information
Locus ID:
Sp1g09640.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
DNA helicase
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3409611 | 3417624 | - | Sp1g09640.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.70 | 132,251.77 Da | 51.85 | 78.83 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 646 | 778 | 7.10187E-76 | - |
| CDD | cd17920 | DEXHc_RecQ | 446 | 645 | 3.06491E-102 | - |
| Pfam | PF16124 | RecQ zinc-binding | 780 | 860 | 3.8E-15 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 1018 | 1081 | 2.0E-14 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 662 | 768 | 5.4E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 457 | 625 | 5.4E-18 | IPR011545 |
| Pfam | PF09382 | RQC domain | 868 | 981 | 9.7E-21 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 421 | 787 | 6.8E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1015 | 1085 | 6.76E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 644 | 910 | 5.93E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 418 | 645 | 2.5E-90 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 646 | 862 | 6.8E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1006 | 1091 | 2.1E-22 | IPR044876 |
| Gene3D | G3DSA:1.10.10.10 | - | 867 | 978 | 3.2E-20 | IPR036388 |
| SMART | SM00487 | ultradead3 | 451 | 654 | 7.0E-31 | IPR014001 |
| SMART | SM00341 | hrdc7 | 1009 | 1091 | 1.9E-4 | IPR002121 |
| SMART | SM00490 | helicmild6 | 688 | 769 | 2.3E-27 | IPR001650 |
| SMART | SM00956 | RQC_2 | 869 | 980 | 2.5E-29 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 447 | 920 | 1.4E-163 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 663 | 808 | 19.387199 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1009 | 1091 | 17.173141 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 463 | 638 | 22.348257 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 678 | 719 | 8.800248 | IPR001763 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 577 | 586 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 384 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1099 | 1116 | - | - |
| Coils | Coil | Coil | 317 | 351 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_048597788.1 | ATP-dependent DNA helicase Q-like 4A [Brassica napus] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A8X7PSG7 | Uncharacterized protein OS=Brassica carinata OX=52824 GN=Bca52824_076099 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology