Basic Information
Locus ID:
Sp1g09440.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Contains the following InterPro domains F-box domain, cyclin-like (InterPro IPR001810), F-box domain, Skp2-like (InterPro IPR022364), F-box associated domain, type 3 (InterPro IPR013187), F-box associated interaction domain (InterPro IPR017451)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 3328758 | 3329960 | - | Sp1g09440.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.97 | 46,418.34 Da | 48.68 | 93.97 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 9 | 47 | 7.3E-7 | IPR001810 |
| Pfam | PF08268 | F-box associated domain | 215 | 344 | 2.9E-32 | IPR013187 |
| SUPERFAMILY | SSF81383 | F-box domain | 9 | 64 | 7.19E-9 | IPR036047 |
| SMART | SM00256 | fbox_2 | 10 | 51 | 4.8E-4 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 353 | 9.3E-40 | IPR017451 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.2 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018511948.2 | putative F-box protein At5g62660 [Brassica rapa] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A398AIC5 | Rhodanese domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_B02075 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |