Basic Information
Locus ID:
Sp1g08540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
Rhamnogalacturonate lyase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 2971963 | 2976444 | - | Sp1g08540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 59,015.97 Da | 32.84 | 72.40 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10317 | RGL4_C | 328 | 514 | 2.8935E-55 | - |
| CDD | cd10316 | RGL4_M | 217 | 316 | 3.27909E-34 | IPR029413 |
| CDD | cd10320 | RGL4_N | 1 | 178 | 7.59024E-60 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 241 | 311 | 5.6E-26 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 1 | 86 | 2.6E-32 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 326 | 513 | 1.6E-53 | IPR029411 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 254 | 308 | 1.35E-9 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 323 | 514 | 6.04E-53 | IPR008979 |
| Gene3D | G3DSA:2.60.120.260 | - | 324 | 514 | 3.0E-20 | - |
| Gene3D | G3DSA:2.70.98.10 | - | 1 | 193 | 2.8E-6 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 215 | 313 | 3.3E-8 | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09910.1 | Rhamnogalacturonate lyase family protein. | 0 |
| RefSeq | XP_006417519.2 | probable rhamnogalacturonate lyase B isoform X1 [Eutrema salsugineum] | 0 |
| TrEMBL | V4L0N6 | rhamnogalacturonan endolyase OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007058mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology