Basic Information
Locus ID:
Sp1g06310.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 2164907 | 2165326 | - | Sp1g06310.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.09 | 15,469.07 Da | 47.62 | 97.48 | 0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 87 | 130 | 6.0E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 134 | 1.06E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 135 | 4.3E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 88 | 129 | 7.9E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 88 | 130 | 12.046688 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28920.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_018450567.1 | PREDICTED: probable E3 ubiquitin-protein ligase ATL45 [Raphanus sativus] | 0 |
| Q9SG96 | RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0KRK6 | probable E3 ubiquitin-protein ligase ATL45 OS=Raphanus sativus OX=3726 GN=LOC108822052 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G28920.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10009927m.g.v1.0, Thhalv10023843m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g06310.v2.2, Sp4g11730.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g014960.2N, BniB03g002300.2N |