Basic Information
Locus ID:
Sp1g05850.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
BEST Arabidopsis thaliana protein match is F-box and associated interaction domains-containing protein (TAIR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 2015450 | 2016478 | + | Sp1g05850.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 40,070.76 Da | 49.02 | 83.68 | -0.37 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40920.2 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_018511948.2 | putative F-box protein At5g62660 [Brassica rapa] | 0 |
| Q2V414 | F-box/LRR-repeat protein At2g40920 OS=Arabidopsis thaliana OX=3702 GN=At2g40920 PE=2 SV=2 | 0 | |
| TrEMBL | A0A398AIC5 | Rhodanese domain-containing protein OS=Brassica campestris OX=3711 GN=BRARA_B02075 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 11 | AT2G16810.1, AT2G40910.1, AT2G40920.1, AT2G40925.1 ... |
| Brassicaceae | Eutrema salsugineum | 16 | Thhalv10004411m.g.v1.0, Thhalv10005275m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 3 | Sp1g05850.v2.2, Sp1g09440.v2.2, Sp4g23370.v2.2 |
| Brassicaceae | Brassica nigra | 35 | BniB01g038340.2N, BniB02g054720.2N, BniB02g059130.2N ... |