Basic Information
Locus ID:
Sp1g04370.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 1521246 | 1525976 | + | Sp1g04370.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 66,653.23 Da | 29.42 | 103.27 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 298 | 400 | 1.34877E-25 | - |
| CDD | cd00030 | C2 | 471 | 571 | 1.04769E-26 | - |
| Pfam | PF00168 | C2 domain | 297 | 400 | 2.8E-24 | IPR000008 |
| Pfam | PF00168 | C2 domain | 469 | 571 | 3.1E-26 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 104 | 282 | 5.3E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 466 | 586 | 3.56E-33 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 288 | 424 | 1.42E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 449 | 588 | 1.3E-35 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 289 | 424 | 1.1E-32 | IPR035892 |
| SMART | SM00239 | C2_3c | 470 | 568 | 1.6E-25 | IPR000008 |
| SMART | SM00239 | C2_3c | 297 | 397 | 1.7E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 451 | 569 | 21.287294 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 101 | 283 | 29.780315 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 277 | 398 | 20.499006 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 512 | 525 | 2.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 534 | 542 | 2.5E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 486 | 498 | 2.5E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_024008634.1 | synaptotagmin-5 [Eutrema salsugineum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | V4L9B7 | Synaptotagmin-5-like OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10007226mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology