Basic Information
Locus ID:
Sp1g03720.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 1282255 | 1285622 | - | Sp1g03720.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 50,479.18 Da | 51.25 | 73.14 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 268 | 332 | 7.28099E-22 | - |
| CDD | cd16872 | ARID_HMGB9-like | 36 | 121 | 8.91144E-47 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 268 | 335 | 3.4E-14 | IPR009071 |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 38 | 121 | 8.4E-16 | IPR001606 |
| SUPERFAMILY | SSF46774 | ARID-like | 35 | 134 | 2.88E-27 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 261 | 340 | 3.14E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 252 | 347 | 1.8E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 25 | 134 | 1.6E-23 | IPR036431 |
| SMART | SM00398 | hmgende2 | 267 | 336 | 5.6E-19 | IPR009071 |
| SMART | SM01014 | ARID_2 | 31 | 121 | 4.2E-28 | - |
| SMART | SM00501 | bright_3 | 35 | 126 | 1.8E-24 | IPR001606 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 34 | 125 | 24.775824 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 268 | 335 | 15.141076 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 368 | 453 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 275 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 262 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_006418086.2 | high mobility group B protein 15 [Eutrema salsugineum] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A565AMD1 | High mobility group B protein 15-like OS=Arabis nemorensis OX=586526 GN=ANE_LOCUS458 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology