Basic Information
Locus ID:
Sp1g03540.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 1224506 | 1229318 | + | Sp1g03540.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.00 | 117,990.27 Da | 51.58 | 67.50 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 774 | 1031 | 8.73783E-107 | - |
| CDD | cd06410 | PB1_UP2 | 127 | 222 | 1.57291E-45 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 771 | 1031 | 3.1E-62 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 140 | 224 | 4.8E-18 | IPR000270 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 140 | 228 | 5.69E-19 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 757 | 1031 | 4.13E-75 | IPR011009 |
| Gene3D | G3DSA:3.10.20.90 | - | 142 | 225 | 1.2E-10 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 856 | 1043 | 1.4E-51 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 761 | 855 | 1.4E-25 | - |
| SMART | SM00220 | serkin_6 | 768 | 1035 | 3.8E-56 | IPR000719 |
| SMART | SM00666 | PB1_new | 138 | 225 | 8.5E-30 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 768 | 1036 | 40.880489 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 774 | 795 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 893 | 905 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 887 | 905 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 850 | 863 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1002 | 1024 | 1.1E-13 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 958 | 980 | 1.1E-13 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 520 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 735 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04700.1 | PB1 domain-containing protein tyrosine kinase. | 0 |
| RefSeq | XP_006418100.1 | uncharacterized protein LOC18994395 [Eutrema salsugineum] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | V4L9J6 | Protein kinase domain-containing protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006649mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology