Basic Information
Locus ID:
Sp1g02940.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Short Name:
ABCC5
Description:
ABC transporter transmembrane region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 977402 | 984181 | - | Sp1g02940.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.87 | 168,341.58 Da | 40.45 | 106.50 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 311 | 598 | 1.21062E-104 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 624 | 824 | 3.66905E-104 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 951 | 1245 | 3.82733E-94 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1268 | 1488 | 1.58968E-125 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 314 | 578 | 3.1E-28 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 954 | 1195 | 8.7E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1287 | 1435 | 8.8E-31 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 642 | 776 | 4.1E-19 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 620 | 846 | 2.66E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1261 | 1500 | 1.21E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 300 | 606 | 2.22E-40 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 946 | 1252 | 9.81E-49 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 277 | 609 | 1.9E-55 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1254 | 1506 | 2.6E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 622 | 854 | 1.4E-71 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 912 | 1247 | 1.1E-57 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1296 | 1481 | 2.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 651 | 824 | 6.4E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 590 | 37.400539 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 624 | 847 | 23.289419 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 953 | 1223 | 35.198719 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1270 | 1504 | 17.707214 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 749 | 763 | - | IPR017871 |
| Coils | Coil | Coil | 471 | 491 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_006418165.1 | ABC transporter C family member 5 [Eutrema salsugineum] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | V4L9V6 | ABC-type xenobiotic transporter OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10006549mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology