Basic Information
Locus ID:
Sp1g00640.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 197103 | 199983 | + | Sp1g00640.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 49,144.66 Da | 58.93 | 79.20 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 353 | 394 | 2.48369E-22 | - |
| CDD | cd01989 | STK_N | 9 | 159 | 7.702E-45 | - |
| Pfam | PF04564 | U-box domain | 350 | 419 | 9.5E-16 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 338 | 421 | 1.77E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 346 | 425 | 1.4E-24 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 10 | 156 | 2.8E-5 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 352 | 415 | 7.7E-19 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 348 | 422 | 32.695473 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 221 | - | - |
| Coils | Coil | Coil | 267 | 301 | - | - |
| Coils | Coil | Coil | 226 | 258 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01670.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_024008341.1 | U-box domain-containing protein 56 isoform X1 [Eutrema salsugineum] | 0 |
| Q8GXQ7 | U-box domain-containing protein 56 OS=Arabidopsis thaliana OX=3702 GN=PUB56 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8S9GGH4 | U-box domain-containing protein OS=Brassica cretica OX=69181 GN=F2Q70_00019071 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |