Basic Information
Locus ID:
Sp1g00630.v2.2
Species & Taxonomic ID:
Schrenkiella parvula & 98039
Genome Assembly:
v2.2
Description:
U-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ch1-1 | 194014 | 196354 | + | Sp1g00630.v2.2 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 35,782.71 Da | 47.85 | 74.86 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 247 | 288 | 1.18648E-22 | - |
| CDD | cd01989 | STK_N | 36 | 158 | 6.63521E-35 | - |
| Pfam | PF04564 | U-box domain | 244 | 313 | 4.6E-20 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 317 | 2.75E-27 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 241 | 317 | 9.2E-28 | IPR013083 |
| Gene3D | G3DSA:3.40.50.620 | HUPs | 10 | 150 | 6.7E-6 | IPR014729 |
| SMART | SM00504 | Ubox_2 | 246 | 309 | 3.0E-26 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 242 | 316 | 38.153271 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 240 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G01680.1 | plant U-box 54. | 0 |
| RefSeq | XP_006418444.1 | U-box domain-containing protein 54 [Eutrema salsugineum] | 0 |
| Q9LQ92 | U-box domain-containing protein 54 OS=Arabidopsis thaliana OX=3702 GN=PUB54 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1J3K1K9 | U-box domain-containing protein 54 OS=Noccaea caerulescens OX=107243 GN=GA_TR15284_c0_g1_i1_g.46916 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Brassicaceae | Arabidopsis thaliana | 3 | AT1G01660.1, AT1G01670.1, AT1G01680.1 |
| Brassicaceae | Eutrema salsugineum | 3 | Thhalv10007636m.g.v1.0, Thhalv10007902m.g.v1.0 ... |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g00630.v2.2, Sp1g00640.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB03g036900.2N, BniB03g036910.2N, BniB08g030000.2N |