Basic Information
Locus ID:
Sgl83234
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| HBcontig3930 | 6587 | 9353 | - | Sgl83234 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 26,394.86 Da | 48.78 | 80.21 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12315 | Protein DA1 | 177 | 210 | 9.9E-8 | IPR022087 |
| Pfam | PF00400 | WD domain, G-beta repeat | 76 | 107 | 7.9E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 44 | 145 | 1.96E-18 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 17 | 170 | 2.3E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 64 | 107 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 28 | 61 | 300.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 116 | 13.85027 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 75 | 110 | 10.785595 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.4 | - | 0 |
| RefSeq | XP_021751883.1 | eukaryotic translation initiation factor 3 subunit I-like [Chenopodium quinoa] | 0 |
| Q0WSN2 | Protein DA1-related 2 OS=Arabidopsis thaliana OX=3702 GN=DAR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803KTV0 | Eukaryotic translation initiation factor 3 subunit I OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg36150, Sbi_jg854 |
| Amaranthaceae | Salicornia europaea | 3 | Seu_jg14697, Seu_jg22036, Seu_jg3800 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl74566, Sgl83234 |