Basic Information
Locus ID:
Sgl82322
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 29480172 | 29483066 | - | Sgl82322 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 106,465.44 Da | 45.57 | 81.70 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14244 | gag-polypeptide of LTR copia-type | 29 | 74 | 4.9E-15 | IPR029472 |
| Pfam | PF00665 | Integrase core domain | 597 | 692 | 3.0E-9 | IPR001584 |
| Pfam | PF03732 | Retrotransposon gag protein | 111 | 206 | 8.0E-8 | IPR005162 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 592 | 755 | 1.39E-35 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 587 | 768 | 1.2E-33 | IPR036397 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 580 | 757 | 18.565952 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 910 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 913 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021863062.1 | uncharacterized protein LOC110801962 [Spinacia oleracea] | 0 |
| P04146 | Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3 | 0 | |
| TrEMBL | A0A834W7H2 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Senna tora OX=362788 GN=G2W53_033008 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||