Basic Information
Locus ID:
Sgl82203
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 27506911 | 27510963 | - | Sgl82203 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.41 | 153,725.94 Da | 30.45 | 91.27 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 487 | 753 | 4.43131E-50 | - |
| CDD | cd06222 | RNase_H_like | 1221 | 1340 | 1.6708E-15 | IPR044730 |
| Pfam | PF13456 | Reverse transcriptase-like | 1221 | 1342 | 1.7E-15 | IPR002156 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 1018 | 1102 | 6.4E-19 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 493 | 732 | 2.9E-41 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 428 | 723 | 3.78E-16 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 10 | 220 | 5.47E-17 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1217 | 1345 | 8.34E-8 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 220 | 1.5E-17 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 1215 | 1345 | 2.1E-11 | IPR036397 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 474 | 737 | 12.975417 | IPR000477 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048498238.1 | uncharacterized protein LOC125496736 [Beta vulgaris subsp. vulgaris] | 0 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | 0 | |
| TrEMBL | F4NCH8 | Reverse transcriptase domain-containing protein OS=Beta vulgaris subsp. vulgaris OX=3555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00010071, GOSA_00015070 |
| Amaranthaceae | Suaeda glauca | 45 | Sgl00660, Sgl00734, Sgl02856, Sgl04536, Sgl05678, Sgl09582 ... |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000022031 |