Basic Information
Locus ID:
Sgl81449
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
DNA RNA polymerases superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 10129811 | 10138340 | + | Sgl81449 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 101,726.39 Da | 38.52 | 89.34 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 2 | 154 | 1.90237E-70 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 201 | 315 | 4.44102E-53 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 3 | 153 | 4.5E-23 | IPR000477 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 784 | 854 | 1.0E-13 | IPR001245 |
| Pfam | PF17917 | RNase H-like domain found in reverse transcriptase | 200 | 294 | 6.9E-30 | IPR041373 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 784 | 867 | 8.09E-22 | IPR011009 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1 | 301 | 1.22E-106 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 413 | 572 | 3.22E-33 | IPR012337 |
| Gene3D | G3DSA:3.10.20.370 | - | 197 | 265 | 1.2E-5 | - |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1 | 79 | 5.7E-62 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 19 | 154 | 5.7E-62 | IPR043128 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 713 | 876 | 1.8E-24 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 412 | 593 | 3.3E-39 | IPR036397 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 649 | 882 | 17.064697 | IPR000719 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1 | 154 | 12.29895 | IPR000477 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 411 | 576 | 18.469671 | IPR001584 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 825 | 837 | - | IPR008271 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08720.2 | - | 0 |
| RefSeq | XP_048498307.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC104890565 [Beta vulgaris subsp. vulgaris] | 0 |
| P0CT41 | Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1 | 0 | |
| TrEMBL | G9FIF2 | RNA-directed DNA polymerase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||