Basic Information
Locus ID:
Sgl81065
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 4815958 | 4819529 | - | Sgl81065 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 83,507.10 Da | 46.50 | 81.59 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 558 | 680 | 3.66069E-26 | IPR044730 |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 367 | 453 | 6.5E-16 | IPR026960 |
| Pfam | PF13456 | Reverse transcriptase-like | 559 | 682 | 1.0E-20 | IPR002156 |
| SUPERFAMILY | SSF56219 | DNase I-like | 2 | 66 | 8.1E-9 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 555 | 685 | 6.96E-15 | IPR012337 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 66 | 4.1E-5 | IPR036691 |
| Gene3D | G3DSA:3.30.420.10 | - | 555 | 690 | 1.4E-17 | IPR036397 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 577 | 684 | 10.438793 | IPR002156 |
| Coils | Coil | Coil | 154 | 174 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019107211.1 | uncharacterized protein LOC109136048 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A803LKW3 | Reverse transcriptase domain-containing protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |