Basic Information
Locus ID:
Sgl80852
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
f-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 2810055 | 2826980 | + | Sgl80852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 38,662.12 Da | 42.17 | 88.09 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 8 | 42 | 9.1E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 80 | 9.03E-11 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 42 | 7.0E-7 | - |
| SMART | SM00256 | fbox_2 | 8 | 48 | 4.9E-7 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 104 | 334 | 3.5E-17 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 2 | 48 | 8.888098 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_021854719.1 | F-box protein CPR30-like [Spinacia oleracea] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9R2Y2 | F-box domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_112700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015776 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl03845, Sgl08938, Sgl80852 |