Basic Information
Locus ID:
Sgl80583
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 751892 | 761660 | - | Sgl80583 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 175,557.83 Da | 47.11 | 61.67 | -0.95 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02208 | cupin_RmlC-like | 1206 | 1254 | 0.00343589 | - |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1165 | 1265 | 2.0E-15 | IPR003347 |
| Pfam | PF08879 | WRC | 40 | 80 | 6.8E-11 | IPR014977 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 744 | 1302 | 3.71E-34 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 732 | 1004 | 1.7E-88 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1090 | 1291 | 1.1E-69 | - |
| SMART | SM00558 | cupin_9 | 846 | 1282 | 9.8E-79 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 38 | 83 | 16.608868 | IPR014977 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 865 | 1282 | 24.41181 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 406 | 452 | 8.668251 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 968 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1071 | 1103 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1318 | 1366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 967 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1367 | 1388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1431 | 1527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 309 | 344 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 147 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1163 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 166 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1445 | 1527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 264 | 300 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1136 | 1164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 600 | 619 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1318 | 1403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1389 | 1403 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 952 | 994 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 167 | 213 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 251 | - | - |
| Coils | Coil | Coil | 21 | 41 | - | - |
| Coils | Coil | Coil | 220 | 240 | - | - |
| Coils | Coil | Coil | 1362 | 1382 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021842001.1 | lysine-specific demethylase JMJ25-like [Spinacia oleracea] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJ28 | Lysine-specific demethylase JMJ25-like OS=Spinacia oleracea OX=3562 GN=SOVF_061180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology