halophFGD

Basic Information

Locus ID: Sgl80573

Species & Taxonomic ID: Suaeda glauca & 397272

Genome Assembly: GWHEQCX00000000

Description: domain in FBox and BRCT domain containing plant proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chrB9	637281	644958	+	Sgl80573

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
9.86	16,299.50 Da	51.13	84.29	-0.54

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	20	52	1.2E-7	IPR001810
SUPERFAMILY	SSF81383	F-box domain	17	62	3.14E-11	IPR036047
Gene3D	G3DSA:1.20.1280.50	-	5	55	1.4E-9	-
ProSiteProfiles	PS50181	F-box domain profile.	18	55	10.265807	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT3G59250.1	F-box/RNI-like superfamily protein.
RefSeq	XP_028098083.1	F-box/LRR-repeat protein At5g02910-like [Camellia sinensis]
Swiss-Prot	Q9LX46	F-box/LRR-repeat protein At3g59250 OS=Arabidopsis thaliana OX=3702 GN=At3g59250 PE=2 SV=1
TrEMBL	A0A6A4KDN7	F-box domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_23317 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Suaeda glauca	2	Sgl78068, Sgl80573
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_15_RagTag.637
Rhizophoraceae	Kandelia obovata	1	Maker00002376