Basic Information
Locus ID:
Sgl80540
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB9 | 350350 | 366742 | + | Sgl80540 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.39 | 116,107.05 Da | 44.10 | 76.25 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 268 | 633 | 2.67116E-80 | - |
| CDD | cd18793 | SF2_C_SNF | 890 | 994 | 7.57221E-51 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 888 | 985 | 2.7E-14 | IPR001650 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 749 | 785 | 1.5E-6 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 288 | 710 | 3.3E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 641 | 1027 | 1.35E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 252 | 633 | 1.16E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 744 | 786 | 8.17E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 500 | 645 | 8.1E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 648 | 1042 | 1.1E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 399 | 485 | 8.2E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 239 | 329 | 3.4E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 735 | 800 | 2.7E-10 | IPR013083 |
| SMART | SM00490 | helicmild6 | 902 | 985 | 6.7E-15 | IPR001650 |
| SMART | SM00487 | ultradead3 | 264 | 610 | 5.0E-27 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 872 | 1038 | 13.426858 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 416 | 595 | 11.974047 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 749 | 788 | 10.881201 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 764 | 773 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 103 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 415 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 69 | 126 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 480 | 508 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021735489.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology