Basic Information
Locus ID:
Sgl80484
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
BEST Arabidopsis thaliana protein match is Protein of
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 36444738 | 36462496 | + | Sgl80484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.68 | 192,578.81 Da | 38.62 | 85.67 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1527 | 1647 | 6.81244E-20 | IPR044730 |
| Pfam | PF14365 | Neprosin activation peptide | 951 | 1021 | 9.6E-21 | IPR025521 |
| Pfam | PF00646 | F-box domain | 13 | 50 | 3.2E-5 | IPR001810 |
| Pfam | PF13456 | Reverse transcriptase-like | 1528 | 1649 | 7.2E-19 | IPR002156 |
| Pfam | PF03080 | Neprosin | 1064 | 1167 | 1.4E-35 | IPR004314 |
| Pfam | PF03080 | Neprosin | 1218 | 1442 | 1.9E-76 | IPR004314 |
| Pfam | PF03080 | Neprosin | 700 | 918 | 7.1E-58 | IPR004314 |
| SUPERFAMILY | SSF52047 | RNI-like | 92 | 332 | 7.59E-15 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 11 | 57 | 1.06E-9 | IPR036047 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1523 | 1652 | 1.9E-10 | IPR012337 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 65 | 348 | 1.7E-12 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 64 | 1.4E-5 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1523 | 1651 | 1.7E-11 | IPR036397 |
| Gene3D | G3DSA:3.90.1320.10 | - | 1070 | 1170 | 4.0E-12 | - |
| Gene3D | G3DSA:3.90.1320.10 | - | 726 | 813 | 2.4E-8 | - |
| Gene3D | G3DSA:3.90.1320.10 | - | 1224 | 1335 | 3.8E-15 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 11 | 66 | 8.994076 | IPR001810 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1551 | 1651 | 9.131036 | IPR002156 |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G44220.1 | Protein of Unknown Function (DUF239). | 0 |
| RefSeq | XP_019107445.2 | uncharacterized protein LOC104903704 [Beta vulgaris subsp. vulgaris] | 0 |
| C0HLV2 | Protein neprosin OS=Nepenthes x ventrata OX=1744888 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1R3HKR8 | Neprosin domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_18585 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology