Basic Information
Locus ID:
Sgl80405
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 35799735 | 35802598 | - | Sgl80405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.56 | 23,462.11 Da | 37.85 | 85.07 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 81 | 135 | 4.5E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 77 | 139 | 6.0E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 145 | 3.8E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 80 | 136 | 2.6E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 73 | 142 | 17.611229 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_021732929.1 | uncharacterized protein LOC110699710 [Chenopodium quinoa] | 0 |
| TrEMBL | A0A7C9E2R5 | RING-CH-type domain-containing protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology