Basic Information
Locus ID:
Sgl80103
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 32773792 | 32775192 | - | Sgl80103 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 49,152.82 Da | 43.20 | 90.74 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 324 | 430 | 4.85369E-32 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 330 | 431 | 5.2E-17 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 281 | 429 | 9.93E-8 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 7 | 71 | 1.17E-6 | IPR036691 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 1 | 72 | 8.2E-6 | IPR036691 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| TrEMBL | A0A2N9H0F6 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS33237 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||