Basic Information
Locus ID:
Sgl80086
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 32651092 | 32664350 | - | Sgl80086 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.95 | 93,765.09 Da | 36.88 | 89.63 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 416 | 684 | 2.23615E-61 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 422 | 659 | 1.2E-46 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 15 | 160 | 1.7E-19 | IPR036691 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 374 | 650 | 1.96E-20 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 2 | 161 | 9.6E-20 | IPR036691 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 773 | 830 | 2.5E-11 | IPR014710 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 403 | 684 | 18.325657 | IPR000477 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| O00370 | LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||