Basic Information
Locus ID:
Sgl80037
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Ribonuclease H protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 32010336 | 32014049 | - | Sgl80037 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.83 | 143,747.27 Da | 40.14 | 89.52 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06222 | RNase_H_like | 1076 | 1199 | 5.08284E-27 | IPR044730 |
| CDD | cd01650 | RT_nLTR_like | 363 | 631 | 7.40514E-51 | - |
| Pfam | PF13966 | zinc-binding in reverse transcriptase | 885 | 971 | 5.8E-16 | IPR026960 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 369 | 600 | 9.9E-38 | IPR000477 |
| Pfam | PF13456 | Reverse transcriptase-like | 1077 | 1201 | 2.8E-18 | IPR002156 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 315 | 596 | 8.23E-16 | IPR043502 |
| SUPERFAMILY | SSF56219 | DNase I-like | 10 | 111 | 7.2E-17 | IPR036691 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1074 | 1201 | 9.56E-11 | IPR012337 |
| Gene3D | G3DSA:3.30.420.10 | - | 1074 | 1206 | 4.7E-13 | IPR036397 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 4 | 111 | 1.3E-14 | IPR036691 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 350 | 631 | 14.205358 | IPR000477 |
| Coils | Coil | Coil | 199 | 219 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G20520.1 | RNA binding;RNA-directed DNA polymerases. | 0 |
| RefSeq | XP_048497307.1 | uncharacterized protein LOC104885230 [Beta vulgaris subsp. vulgaris] | 0 |
| P14381 | Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9EMX2 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8069 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23361 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017683 |
| Amaranthaceae | Suaeda glauca | 26 | Sgl03531, Sgl03532, Sgl06702, Sgl08674, Sgl08675, Sgl10543 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0013210 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G20438, Lb4G25393 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000001l.137 |