Basic Information
Locus ID:
Sgl79906
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Mitochondrial ubiquitin ligase activator of NFKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 30393137 | 30400736 | - | Sgl79906 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 77,895.97 Da | 48.56 | 81.15 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 283 | 329 | 1.3E-12 | - |
| Pfam | PF12483 | E3 Ubiquitin ligase | 83 | 228 | 8.5E-34 | IPR022170 |
| SUPERFAMILY | SSF57850 | RING/U-box | 277 | 329 | 1.41E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 261 | 331 | 2.5E-16 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 285 | 325 | 10.586141 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 267 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 250 | 275 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G54150.1 | E3 Ubiquitin ligase family protein. | 0 |
| RefSeq | XP_021716528.1 | E3 ubiquitin-protein ligase SPL2-like [Chenopodium quinoa] | 0 |
| Q9SYH3 | E3 ubiquitin-protein ligase SPL2 OS=Arabidopsis thaliana OX=3702 GN=SPL2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9S4F1 | RING-type E3 ubiquitin transferase OS=Spinacia oleracea OX=3562 GN=SOVF_000360 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||