Basic Information
Locus ID:
Sgl79751
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
gag-polypeptide of LTR copia-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 28089422 | 28091386 | - | Sgl79751 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.01 | 76,027.56 Da | 42.02 | 70.34 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 598 | 612 | 5.2E-4 | IPR001878 |
| Pfam | PF00098 | Zinc knuckle | 288 | 303 | 2.2E-4 | IPR001878 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 78 | 216 | 1.7E-25 | - |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 592 | 618 | 3.29E-6 | IPR036875 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 270 | 310 | 1.92E-6 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 283 | 327 | 3.9E-6 | - |
| SMART | SM00343 | c2hcfinal6 | 597 | 613 | 8.9E-4 | IPR001878 |
| SMART | SM00343 | c2hcfinal6 | 288 | 304 | 0.0029 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 289 | 303 | 9.48789 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 598 | 613 | 9.998857 | IPR001878 |
| Coils | Coil | Coil | 430 | 478 | - | - |
| Coils | Coil | Coil | 520 | 540 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021726220.1 | coiled-coil domain-containing protein 186-like [Chenopodium quinoa] | 0 |
| TrEMBL | A2I5F8 | Integrase OS=Beta vulgaris OX=161934 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Suaeda glauca | 28 | Sgl00169, Sgl03111, Sgl03123, Sgl05219, Sgl08211, Sgl10299 ... |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106406 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132613087 |