Basic Information
Locus ID:
Sgl79609
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
high mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 25185221 | 25188520 | - | Sgl79609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.00 | 30,027.60 Da | 62.59 | 63.28 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 210 | 255 | 6.26278E-10 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 210 | 256 | 1.1E-6 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 198 | 256 | 1.44E-9 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 40 | 85 | 2.88E-7 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 192 | 261 | 2.0E-9 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 35 | 89 | 1.4E-6 | IPR036431 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 210 | 265 | 9.585828 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 187 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 164 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_021837956.1 | high mobility group B protein 15-like isoform X2 [Spinacia oleracea] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RKE8 | High mobility group B protein 15-like OS=Spinacia oleracea OX=3562 GN=SOVF_061930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology