Basic Information
Locus ID:
Sgl78620
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
Cell division cycle 20.2, cofactor of APC complex-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 5307877 | 5311123 | - | Sgl78620 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.11 | 49,153.96 Da | 46.59 | 74.75 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 145 | 414 | 1.60585E-40 | - |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 159 | 219 | 1.3E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 291 | 329 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 379 | 414 | 0.0045 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 244 | 278 | 4.0E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 79 | 414 | 2.01E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 417 | 3.3E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 239 | 278 | 1.9E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 109 | 150 | 450.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 332 | 372 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 287 | 329 | 5.9E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 197 | 235 | 1.8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 155 | 194 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 375 | 414 | 3.2E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 382 | 415 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 382 | 415 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 162 | 194 | 9.124694 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 246 | 278 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 162 | 203 | 11.845179 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 246 | 278 | 13.950525 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 401 | 415 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 0 |
| RefSeq | XP_010671158.1 | cell division cycle 20.2, cofactor of APC complex [Beta vulgaris subsp. vulgaris] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A803L226 | ANAPC4_WD40 domain-containing protein OS=Chenopodium quinoa OX=63459 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology