Basic Information
Locus ID:
Sgl78073
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 751837 | 762092 | - | Sgl78073 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 181,395.75 Da | 47.06 | 61.70 | -0.96 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 8 | 42 | 5.3E-9 | IPR014977 |
| Pfam | PF02373 | JmjC domain, hydroxylase | 1385 | 1487 | 2.2E-14 | IPR003347 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1055 | 1525 | 3.3E-37 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1045 | 1513 | 4.4E-151 | - |
| SMART | SM00558 | cupin_9 | 1161 | 1504 | 2.8E-68 | IPR003347 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 6 | 51 | 15.120365 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 723 | 769 | 8.919052 | IPR001841 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1180 | 1504 | 24.816168 | IPR003347 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 505 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 488 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1352 | 1372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 678 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 581 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 622 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 365 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 433 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1343 | 1372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 393 | 407 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 648 | 662 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 366 | 385 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 549 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 468 | 505 | - | - |
| Coils | Coil | Coil | 502 | 546 | - | - |
| Coils | Coil | Coil | 357 | 391 | - | - |
| Coils | Coil | Coil | 459 | 495 | - | - |
| Coils | Coil | Coil | 396 | 416 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G11950.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_021842001.1 | lysine-specific demethylase JMJ25-like [Spinacia oleracea] | 0 |
| C0SUU8 | Lysine-specific demethylase JMJ26 OS=Arabidopsis thaliana OX=3702 GN=JMJ26 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9RJ28 | Lysine-specific demethylase JMJ25-like OS=Spinacia oleracea OX=3562 GN=SOVF_061180 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology