Basic Information
Locus ID:
Sgl78035
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
SNF2 domain-containing protein helicase domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 346013 | 362501 | + | Sgl78035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 121,798.62 Da | 45.16 | 76.62 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 320 | 685 | 4.79903E-80 | - |
| CDD | cd18793 | SF2_C_SNF | 942 | 1046 | 8.11201E-51 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 801 | 837 | 1.5E-6 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 940 | 1037 | 2.9E-14 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 340 | 762 | 3.7E-64 | IPR000330 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 693 | 1079 | 1.48E-51 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 304 | 685 | 1.28E-42 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 796 | 838 | 8.84E-11 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 291 | 381 | 3.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 787 | 852 | 2.9E-10 | IPR013083 |
| Gene3D | G3DSA:3.40.50.10810 | - | 451 | 537 | 8.7E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 552 | 697 | 8.6E-32 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 700 | 1093 | 1.3E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 316 | 662 | 5.0E-27 | IPR014001 |
| SMART | SM00490 | helicmild6 | 954 | 1037 | 6.7E-15 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 801 | 840 | 10.881201 | IPR001841 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 924 | 1090 | 13.426858 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 468 | 647 | 11.974047 | IPR014001 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 816 | 825 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 560 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 440 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 178 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 532 | 579 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 386 | 410 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_021750620.1 | helicase-like transcription factor CHR28 isoform X1 [Chenopodium quinoa] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9QUG1 | Helicase-like transcription factor CHR28 OS=Spinacia oleracea OX=3562 GN=SOVF_139950 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology