Basic Information
Locus ID:
Sgl78017
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrA9 | 178320 | 201679 | + | Sgl78017 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.55 | 89,374.15 Da | 40.57 | 81.64 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 27 | 281 | 3.75031E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 111 | 147 | 1.4E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 231 | 1.7E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 153 | 189 | 1.2E-11 | IPR001680 |
| Pfam | PF13925 | con80 domain of Katanin | 653 | 809 | 9.6E-53 | IPR028021 |
| Pfam | PF00400 | WD domain, G-beta repeat | 70 | 105 | 0.0012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 27 | 62 | 0.0087 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 24 | 312 | 1.37E-71 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 156 | 371 | 5.4E-39 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 155 | 1.9E-33 | IPR015943 |
| SMART | SM00320 | WD40_4 | 150 | 189 | 5.3E-13 | IPR001680 |
| SMART | SM00320 | WD40_4 | 192 | 231 | 5.6E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 234 | 272 | 0.76 | IPR001680 |
| SMART | SM00320 | WD40_4 | 23 | 63 | 5.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 66 | 105 | 3.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 108 | 147 | 1.6E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 30 | 72 | 10.575287 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 198 | 18.69591 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 199 | 234 | 10.970139 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 157 | 194 | 14.371031 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 115 | 149 | 11.787407 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 199 | 240 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 73 | 114 | 14.919653 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 115 | 156 | 14.953072 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 73 | 107 | 11.101955 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 30 | 62 | 8.597424 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 176 | 190 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 176 | 190 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 134 | 148 | 1.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 92 | 106 | 1.1E-6 | IPR020472 |
| Hamap | MF_03022 | Katanin p80 WD40 repeat-containing subunit B1 [KATNB1]. | 19 | 813 | 20.687891 | IPR026962 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 488 | 511 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 329 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 377 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 587 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 469 | 511 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23430.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_021841902.1 | katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Spinacia oleracea] | 0 |
| Q8H0T9 | Katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4 OS=Arabidopsis thaliana OX=3702 GN=KTN80.4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9RHA8 | Katanin p80 WD40 repeat-containing subunit B1 homolog OS=Spinacia oleracea OX=3562 GN=SOVF_071810 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology