Basic Information
Locus ID:
Sgl77474
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
to Saccharomyces cerevisiae UBI4 (YLL039C)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 36664406 | 36666268 | - | Sgl77474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 46,631.72 Da | 47.31 | 83.59 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 80 | 152 | 2.3E-22 | IPR000626 |
| Pfam | PF00240 | Ubiquitin family | 3 | 72 | 1.6E-24 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 79 | 152 | 5.08E-22 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 73 | 4.65E-23 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 79 | 157 | 1.4E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 78 | 3.9E-30 | - |
| SMART | SM00213 | ubq_7 | 1 | 71 | 5.7E-26 | IPR000626 |
| SMART | SM00213 | ubq_7 | 78 | 151 | 4.1E-19 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 80 | 153 | 21.9597 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 71 | 21.284662 | IPR000626 |
| ProSitePatterns | PS00299 | Ubiquitin domain signature. | 104 | 129 | - | IPR019954 |
| PRINTS | PR00348 | Ubiquitin signature | 11 | 31 | 3.6E-17 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 52 | 73 | 3.6E-17 | IPR019956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 207 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 170 | 207 | - | - |
| Coils | Coil | Coil | 343 | 363 | - | - |
| Coils | Coil | Coil | 308 | 335 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35635.1 | ubiquitin 7. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_010906871.1 | ubiquitin-NEDD8-like protein RUB2 [Elaeis guineensis] | 0 |
| P0C030 | Ubiquitin-NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica OX=39947 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9QDC9 | ubiquitin-NEDD8-like protein RUB2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033676 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 22 | Sbi_jg11016, Sbi_jg16579, Sbi_jg20231, Sbi_jg20232 ... |
| Amaranthaceae | Salicornia europaea | 13 | Seu_jg10372, Seu_jg10505, Seu_jg10732, Seu_jg13063 ... |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73969, Sgl77474 |