Basic Information
Locus ID:
Sgl77324
Species & Taxonomic ID:
Suaeda glauca & 397272
Genome Assembly:
GWHEQCX00000000
Description:
transcriptional corepressor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chrB8 | 35619140 | 35628622 | + | Sgl77324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.34 | 80,948.40 Da | 52.02 | 65.84 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 465 | 741 | 5.6845E-56 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 709 | 741 | 0.029 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 463 | 493 | 0.0047 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.1E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 625 | 659 | 0.004 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 503 | 535 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 464 | 741 | 2.85E-56 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 594 | 741 | 7.8E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 458 | 593 | 2.8E-28 | IPR015943 |
| SMART | SM00320 | WD40_4 | 621 | 659 | 4.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 703 | 741 | 4.4E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 582 | 618 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 662 | 701 | 0.6 | IPR001680 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0016 | IPR006594 |
| SMART | SM00320 | WD40_4 | 496 | 535 | 4.2E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 539 | 579 | 3.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 493 | 7.8E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 628 | 668 | 9.03805 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 503 | 538 | 10.943775 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 710 | 741 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 503 | 544 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.40982 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 710 | 741 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 468 | 502 | 9.639578 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 522 | 536 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 480 | 494 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 368 | - | - |
| Coils | Coil | Coil | 87 | 107 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_019106448.1 | transcriptional corepressor LEUNIG_HOMOLOG isoform X1 [Beta vulgaris subsp. vulgaris] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9R1F4 | LisH domain-containing protein OS=Spinacia oleracea OX=3562 GN=SOVF_117780 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology